Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs2308114 chr9:98507307 C/CAG 2.0E-5 118 32.7 47.93 40.67 KM Plot
THYM rs2313497 chr1:227349322 G/A 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs2317582 chr3:100914154 C/G 1.71E-11 119 20.53 38.33 46.07 KM Plot
THYM rs2336540 chr3:52974589 G/A 0.000223 119 42.9 23.75 25.63 KM Plot
THYM rs2336541 chr3:52974630 G/C 0.000223 119 42.9 23.75 25.63 KM Plot
THYM rs2340717 chr1:161822959 C/T 1.67E-8 117 12.63 54.18 38.23 KM Plot
THYM rs2354278 chr19:43647978 C/G 0.000201 119 41.7 38.83 37.35 KM Plot
THYM rs2357816 chr2:10960027 C/T 0.000255 119 42.9 38.23 62.72 KM Plot
THYM rs2363291 chr2:30689570 T/C 1.29E-8 119 37.37 50.07 33.13 KM Plot
THYM rs2363294 chr2:30707619 C/T 1.32E-8 119 38.83 44.75 33.13 KM Plot
THYM rs2363311 chr2:30749218 G/A 1.86E-8 117 36.4 50.1 33.13 KM Plot
THYM rs2363851 chr2:30805631 C/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs2364841 chr14:78284036 A/G 0.000228 119 24.17 46.27 38.58 KM Plot
THYM rs2377454 chr2:106727128 C/T 0.000154 119 42.82 36.4 27.68 KM Plot
THYM rs2385335 chr8:50226574 A/G 6.06E-10 119 46.43 50.1 26.52 KM Plot